PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13645_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 253aa    MW: 28137.7 Da    PI: 8.1182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13645_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-1365111354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h  +E+rRRdriNs ++ Lr+l+P++      Kl+Ka+ L  ++e +k+L
  RrC13645_p2  65 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 111
                  68*************************8.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04662111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1364117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-1265113No hitNo description
Gene3DG3DSA:4.10.280.108.8E-1465116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1168117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00253146221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MENSYESAAK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFS SSSSSGNFQA DEFVGGIEKG  60
ELVSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL LATVIEQVKE LKQTATQSPT  120
FKDLPTEADE VIVQPETISN DFEPDTIIFK ASFCCEDQPE AISEIIRVLT KFQLETLQAE  180
IICVGARMRI NFVLKDSNRK ETTTSMAASA KSLKQSLCAA LNRIASSSSS SSTSSVCRIR  240
SKRQRWFLSS HYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325721e-162AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633919.11e-160PREDICTED: transcription factor bHLH51-like
RefseqXP_013690745.11e-160PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF01e-133BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A078DV991e-160A0A078DV99_BRANA; BnaC04g46850D protein
TrEMBLA0A0D3C5C31e-160A0A0D3C5C3_BRAOL; Uncharacterized protein
STRINGBra017024.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-126bHLH family protein